How To Secure Nginx with Let’s Encrypt on Ubuntu 14.04


January 2, 2016

Tutorial, Ubuntu

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Let’s Encrypt is a new Certificate Authority (CA) that provides an easy way to obtain and install free TLS/SSL certificates, thereby enabling encrypted HTTPS on web servers. It simplifies the process by providing a software client, letsencrypt, that attempts to automate most (if not all) of the required steps. Currently, as Let’s Encrypt is still in open beta, the entire process of obtaining and installing a certificate is fully automated only on Apache web servers. However, Let’s Encrypt can be used to easily obtain a free SSL certificate, which can be installed manually, regardless of your choice of web server software.

In this tutorial, we will show you how to use Let’s Encrypt to obtain a free SSL certificate and use it with Nginx on Ubuntu 14.04. We will also show you how to automatically renew your SSL certificate. If you’re running a different web server, simply follow your web server’s documentation to learn how to use the certificate with your setup.


Before following this tutorial, you’ll need a few things.

You should have an Ubuntu 14.04 server with a non-root user who has sudo privileges. You can learn how to set up such a user account by following steps 1-3 in our initial server setup for Ubuntu 14.04.

You must own or control the registered domain name that you wish to use the certificate with. If you do not already have a registered domain name, you may register one with one of the many domain name registrars out there (e.g. Namecheap, GoDaddy, etc.).

If you haven’t already, be sure to create an A Record that points your domain to the public IP address of your server. This is required because of how Let’s Encrypt validates that you own the domain it is issuing a certificate for. For example, if you want to obtain a certificate for, that domain must resolve to your server for the validation process to work. Our setup will use as the domain names, so both DNS records are required.

Once you have all of the prerequisites out of the way, let’s move on to installing the Let’s Encrypt client software.

Step 1 — Install Let’s Encrypt Client

The first step to using Let’s Encrypt to obtain an SSL certificate is to install the letsencrypt software on your server. Currently, the best way to install Let’s Encrypt is to simply clone it from the official GitHub repository. In the future, it will likely be available via a package manager.

Install Git

Let’s install Git now, so we can clone the Let’s Encrypt repository.

Update your server’s package manager with this command:

  • sudo apt-get update

Then install the git package with apt-get:

  • sudo apt-get -y install git

With git installed, we can easily download letsencrypt by cloning the repository from GitHub.

Clone Let’s Encrypt

We can now clone the Let’s Encrypt repository in /opt with this command:

  • sudo git clone /opt/letsencrypt

You should now have a copy of the letsencrypt repository in the /opt/letsencrypt directory.

Step 2 — Obtain a Certificate

Let’s Encrypt provides a variety of ways to obtain SSL certificates, through various plugins. Unlike the Apache plugin, which is covered in a different tutorial, most of the plugins will only help you with obtaining a certificate which you must manually configure your web server to use. Plugins that only obtain certificates, and don’t install them, are referred to as “authenticators” because they are used to authenticate whether a server should be issued a certificate.

We’ll show you how to use either the Standalone plugin to obtain an SSL certificate.

Verify Port 80 is Open

The Standalone plugin provides a very simple way to obtain SSL certificates. It works by temporarily running a small web server, on port 80, on your server, to which the Let’s Encrypt CA can connect and validate your server’s identity before issuing a certificate. As such, this method requires that port 80 is not in use. That is, be sure to stop your normal web server, if it’s using port 80 (i.e. http), before attempting to use this plugin.

For example, if you’re using Nginx, you can stop it by running this command:

  • sudo service nginx stop

If you’re not sure if port 80 is in use, you can run this command:

netstat -na | grep ':80.*LISTEN'

If there is no output when you run this command, you can use the Standalone plugin.

Run Let’s Encrypt

Before using Let’s Encrypt, change to the letsencrypt directory:

  • cd /opt/letsencrypt

Now use the Standalone plugin by running this command:

  • ./letsencrypt-auto certonly –standalone

Note: The Let’s Encrypt software requires superuser privileges, so you will be required to enter your password if you haven’t used sudo recently.

After letsencrypt initializes, you will be prompted for some information. This exact prompts may vary depending on if you’ve used Let’s Encrypt before, but we’ll step you through the first time.

At the prompt, enter an email address that will be used for notices and lost key recovery:

Email prompt

Then you must agree to the Let’s Encrypt Subscribe Agreement. Select Agree:

Let's Encrypt Subscriber's Agreement

Then enter your domain name(s). Note that if you want a single cert to work with multiple domain names (e.g. and, be sure to include all of them:

Domain name prompt

If everything was successful, you should see an output message that looks something like this:

 - If you lose your account credentials, you can recover through
   e-mails sent to
 - Congratulations! Your certificate and chain have been saved at
   /etc/letsencrypt/live/ Your
   cert will expire on 2016-03-15. To obtain a new version of the
   certificate in the future, simply run Let's Encrypt again.
 - Your account credentials have been saved in your Let's Encrypt
   configuration directory at /etc/letsencrypt. You should make a
   secure backup of this folder now. This configuration directory will
   also contain certificates and private keys obtained by Let's
   Encrypt so making regular backups of this folder is ideal.
 - If like Let's Encrypt, please consider supporting our work by:

   Donating to ISRG / Let's Encrypt:
   Donating to EFF:          

You will want to note the path and expiration date of your certificate, which was highlighted in the example output.

Note: If your domain is routing through a DNS service like CloudFlare, you will need to temporarily disable it until you have obtained the certificate.

Certificate Files

After obtaining the cert, you will have the following PEM-encoded files:

  • cert.pem: Your domain’s certificate
  • chain.pem: The Let’s Encrypt chain certificate
  • fullchain.pem: cert.pem and chain.pem combined
  • privkey.pem: Your certificate’s private key

It’s important that you are aware of the location of the certificate files that were just created, so you can use them in your web server configuration. The files themselves are placed in a subdirectory in/etc/letsencrypt/archive. However, Let’s Encrypt creates symbolic links to the most recent certificate files in the /etc/letsencrypt/live/your_domain_name directory. Because the links will always point to the most recent certificate files, this is the path that you should use to refer to your certificate files.

You can check that the files exist by running this command (substituting in your domain name):

  • sudo ls /etc/letsencrypt/live/your_domain_name

The output should be the four previously mentioned certificate files. You will most likely configure your web server to use fullchain.pem as the certificate file, and privkey.pem as the certificate key file.

Step 3 — Configure TLS/SSL on Web Server (Nginx)

Now you have an SSL certificate, you need to configure your web server to use it.

We’ll demonstrate how to configure the Nginx web server to use the certificate. If you use different web server software, you will need to reference how to set up SSL certificates with that particular software.

If you haven’t installed Nginx yet, you can just type:

  • sudo apt-get install nginx

Now you must edit the Nginx configuration that contains your server block. By default, it’s located at/etc/nginx/sites-available/default. We’ll use nano to edit it:

  • sudo nano /etc/nginx/sites-available/default

Find the server block. It might look something like this:

Nginx configuration
server {
        listen 80 default_server;
        listen [::]:80 default_server ipv6only=on;

        root /usr/share/nginx/html;
        index index.html index.htm;

        location / {
                try_files $uri $uri/ =404;

Comment out or delete the lines that configure this server block to listen on port 80. In the example configuration, these two lines should be deleted:

Nginx configuration deletions
        listen 80 default_server;
        listen [::]:80 default_server ipv6only=on;

We are going to configure this server block to listen on port 443 with SSL enabled instead.

Within your server { block, add the following lines but replace all of the instances of example.comwith your own domain:

Nginx configuration additions — 1 of 3
        listen 443 ssl;


        ssl_certificate /etc/letsencrypt/live/;
        ssl_certificate_key /etc/letsencrypt/live/;

This enables your server to use SSL, and tells it to use the Let’s Encrypt SSL certificate that we obtained earlier.

To allow only the most secure SSL protocols and ciphers, add the following lines to the same server block:

Nginx configuration additions — 2 of 3
        ssl_protocols TLSv1 TLSv1.1 TLSv1.2;
        ssl_prefer_server_ciphers on;
        ssl_ciphers AES256+EECDH:AES256+EDH:!aNULL;

Lastly, outside of the original server block (that is listening on HTTPS, port 443), add this server block to redirect HTTP (port 80) to HTTPS. Be sure to replace the highlighted part with your own domain name:

Nginx configuration additions — 3 of 3
server {
    listen 80;
    return 301 https://$host$request_uri;

Save and exit.

Now put the changes into effect by restarting Nginx:

  • sudo service nginx restart

The Let’s Encrypt TLS/SSL certificate is now in place. At this point, you should test that the TLS/SSL certificate works by visiting your domain via HTTPS in a web browser.

Step 4 — Set Up Auto Renewal

Let’s Encrypt certificates are valid for 90 days, but it’s recommended that you renew the certificates every 60 days to allow a margin of error. At the time of this writing, automatic renewal is still not available as a feature of the client itself, but you can manually renew your certificates by running the Let’s Encrypt client again.

A practical way to ensure your certificates won’t get outdated is to create a cron job that will automatically handle the renewal process for you. In order to avoid the interactive, menu-driven process that we used earlier, we will use different parameters when calling the Let’s Encrypt client in the cron job.

We will use Webroot plugin, instead of the Standalone plugin used earlier, because it allows your server to validate your domain without stopping your web server. The Webroot plugin adds a hidden file to your web server’s document root, which the Let’s Encrypt CA can read to verify your domain.

How To Use the Webroot Plugin

To use the Webroot plugin, you must specify the path of your server’s document root. You can look this up in your Nginx configuration or, assuming that you’re using the default Nginx configuration file, you can verify your web root with this command:

  • grep “^\s*root” /etc/nginx/sites-enabled/default

If you’re using the default configuration file, the root will be /usr/share/nginx/html.

Now that we know our webroot-path, we can use the Webroot plugin to renew our certificate with this commands. Here, we are also specifying our domain names with the -d option. Note that you should replace the highlighted parts with the appropriate webroot path and domain names:

  • cd /opt/letsencrypt
  • ./letsencrypt-auto certonly -a webroot –agree-tos –renew-by-default –webroot-path=/usr/share/nginx/html -d -d

Once that succeeds, you will need to reload your Nginx service to use the renewed certificate:

  • sudo service nginx reload

Now that we know the commands that we need to renew our certificate, we can automate this process using scripts and a cron job.

Create a Let’s Encrypt Configuration File

Before moving on, let’s simplify our renewal process by creating a Let’s Encrypt configuration file.

  • sudo cp /opt/letsencrypt/examples/cli.ini /usr/local/etc/le-renew-webroot.ini

Now open the file for editing;

  • sudo nano /usr/local/etc/le-renew-webroot.ini

First, comment out the server = line by adding a # in front of it.

Next, uncomment the email, domains, and webroot-path lines, and update them with your own information. When you are done, the file (with comments removed) should look something like this: excerpt
rsa-key-size = 4096

email =

domains =,

webroot-path = /usr/share/nginx/html

Now, instead of specifying the webroot path and domain names in the command, we can use the Let’s Encrypt configuration file to fill in the blanks. Assuming your configuration file is correct, this command can be used to renew your certificate:

cd opt/letsencrypt
./letsencrypt-auto certonly -a webroot --renew-by-default --config /usr/local/etc/le-renew-webroot.ini

Now let’s create a script that we can use to renew our certificate.

Create a Renewal Script

To automate the renewal process, we will use a shell script that will verify the certificate expiration date for the provided domain and request a renewal when the expiration is less than 30 days away. This script will be scheduled to run once a week. This way, even if a cron job fails, there’s a 30-day window to try again every week.

First, download the script and make it executable. Feel free to review the contents of the script before downloading it.

  • sudo curl -L -o /usr/local/sbin/le-renew-webroot
  • sudo chmod +x /usr/local/sbin/le-renew-webroot

The le-renew-webroot script takes as argument the domain name whose certificate you want to check for renewal. When the renewal is not yet necessary, it will simply output how many days are left until the given certificate expiration.

Note: The script will not run if the /usr/local/etc/le-renew-webroot.ini file does not exist. Also, be sure that the first domain that is specified in the configuration file is the same as the first domain you specified when you originally created the certificate.

If you run the script now, you will be able to see how many days are left for this certificate to expire:

  • sudo le-renew-webroot
Checking expiration date for
The certificate is up to date, no need for renewal (89 days left).

Next, we will edit the crontab to create a new job that will run this command every week. To edit the crontab for the root user, run:

  • sudo crontab -e

Include the following content, all in one line:

crontab entry
30 2 * * 1 /usr/sbin/le-renew-webroot >> /var/log/le-renewal.log

Save and exit. This will create a new cron job that will execute the le-renew-webroot command every Monday at 2:30 am. The output produced by the command will be piped to a log file located at/var/log/le-renewal.log.


That’s it! Your web server is now using a free Let’s Encrypt TLS/SSL certificate to securely serve HTTPS content.


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